pytorch_connectomics
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zudi-lin
PyTorch Connectomics: segmentation toolbox for EM connectomics
Hi, Is it possible to add the evaluation code for Neuron Segmentation tutorial, and also to provide the pre-trained weights for the U-Net for Neuron segmentation please?
Dear developers, Hello! I was trying a quick run of this tutorial notebook [pytorch_connectomics/notebooks/seg2affinity.ipynb](https://github.com/zudi-lin/pytorch_connectomics/blob/master/notebooks/seg2affinity.ipynb) I encountered a problem that `ImportError: cannot import name 'relabel' from 'connectomics.data.utils'` I wonder how could...
changed UNETR and SwinUNETR configs; adjust SwinUNETR code; added aditional description to the pad_size configuration
Bumps [jinja2](https://github.com/pallets/jinja) from 3.0.3 to 3.1.3. Release notes Sourced from jinja2's releases. 3.1.3 This is a fix release for the 3.1.x feature branch. Fix for GHSA-h5c8-rqwp-cp95. You are affected if...
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**Describe the bug** In the following line, the file opened in the list comprehension is not explicitly closed. In Python, it's generally good practice to open files using the `with`...
**Description** The CondSeg project is currently missing comprehensive documentation. **Expected Functionality** A clear and precise documentation that facilitates easy use. **Priority** Low
Hi I am curious if it's possible to initialize the model with some wight generated in previous training. I would like to try to fine tune this model for some...
