Zhuoqing Fang

As title. If you got this error, try to install use `pip` bioconda channel has some issue with gseapy build for now. You have to comiple gseapy (>0.11.0) by youself...

Fixed all NANs when genes with all zeros. #11

2

I have the same issue that " DataFrame contains rows which are entirely zero the result returned by combat() will contain all NaNs". May be it's a good choice to...

genotype calling for structral variants

4

Hi guys, I follow the tutorial command in the wiki page [here](https://github.com/vgteam/toil-vg/wiki/Genotyping-Structural-Variants) for structral variants. when comes to the `toil-vg call`, the current toil-vg (v1.6.0) did not have these two...

unused argument : `min.cov` in toil-vg vcfeval

2

https://github.com/vgteam/toil-vg/blob/99101f2b79a540c09c9774881807059b289b5d42/src/toil_vg/vg_vcfeval.py#L551 I've install the new sveval package from R. ```R BiocManager::install('jmonlong/sveval') ``` Change `min.cov` to `min.ol` could let the toil vdfeval work without issues I don't know how this will...