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**Describe the bug** Hello, I ran into something that I don't really understand with the results of `agat_sp_complement_annotations.pl` and `agat_sp_compare_two_annotations.pl`, and hope you could help me figure it out. I...
Hi! Thanks for the nice tool! I have a question about the parameters for aligning corrected ONT reads to my assembly. My situation is that I used an assembler NECAT...
Dear Shujun, Sorry to bother you again. I had got successful runs in June 2021 with EDTA, but now no idea why EDTA complains about `RMblast engine is not installed`....
Dear developers, Thanks a lot for writing this super easy-to-use tool! I'm new in doing scaffolding with Hi-C data and also in using SALSA. I recently ran salsa with our...
Hi, thanks for developing this cool tool! I used merqury.sh command, and it works smoothly, except that no plots were generated. I didn't get any errors while running the command....
Hello, thanks for the nice and user-friendly tool! I have atac-seq data (150 bp pair-end) from small plant genome, and have been trying HMMRATAC for a while. So the problem...
Hi, I'm recently trying to run repeat masker, but run into some errors. I'm not sure where is wrong, as I had successfully run it before. I ran repeat masker...
Dear prof. Heng Li, Thank you so much for the tool! I have been using hifiasm since 2021, and am a big fan of it. I recently run into different...
Hi, thanks a lot for the very nice tool! I have a question about building the meryl dbs with the Nanopore Q20 reads. What do you think if I use...
Hi, I'm using gffcompare to generate a combined transcripts file from multiple resources. I'm wondering whether we could keep the CDS entry from each resource in the combined.gtf file? It's...