zhichusun

roary and cd-hit

1

I want to know how to remove redundant genes from pan-genome, I analyzed 100 genomes by roary software and got pan_genome_reference.fa file which contains all core and auxiliary genes, I...

Could not find .aligned.fa/.vcf in 73

9

I'm trying to run snippy-multi for a few assembled genomes. 73 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/73.fasta 75 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/75.fasta 95 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/95.fasta A1 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/A1.fasta A6 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/A6.fasta D-3-11 /xulie/shiyanshijiyuanfenxi/jiyuanxulie/D-3-11.fasta snippy-multi input.tab --reference Reference.gbk > 1.sh ./1.sh The...

database

1

hi! do you know what the issue is? Traceback (most recent call last): File "train_plasforest.py", line 174, in main(sys.argv[1:]) File "train_plasforest.py", line 103, in main blast_launcher(inputfile, blast_table, verbose, nthreads, database)...