zhemingfan

Thanks so much @shelkmike!

I'm on macOS: I ran into a similar issue to this, and was able to resolve it by running: `brew install ffmpeg -devel` and running the rest of the instructions.

Hi Shuqi, I'm having the same issue as @mzwaig , albeit for tandem duplications, I will look into sending you the data. Thanks, Jeremy

@jkbonfield thank you for the reply. Sounds good, I definitely agree it makes more sense for it to be part of samtools view. Looking forward to a future update if...

For now, it's just enhancements.

Hi @sarahdada, can you post a sample input with a few rows?

Seems like there's also some performance advantages to `pyfaidx ` [compared to the samtools version](https://www.biostars.org/p/93364/ )

Hi @543090lee and @mattdoug604, the files you posted are not MAVIS config files. MAVIS configuration files are used to specify the specific parameters you want to use for each step...

Hi @543090lee, thank you for the question. The issue stems from the `tabulate` dependency included in Snakemake. We currently have a [PR](https://github.com/bcgsc/mavis/pull/336) that's targeted to fix this. Once its merged,...

Hi @543090lee, try out the latest develop_v3 branch. It should be working now after the merge from the latest PR https://github.com/bcgsc/mavis/pull/337