Zhang Yixing
Zhang Yixing
Dear sir @jltsiren ， @sdws1983 and I from below commands to build the graph, and mapping ngs data. ``` #build graph pangenome vg autoindex -T ./ --workflow giraffe -r $fa...
version of VG ,  Is it a problem with the `vm.overcommit_memory` setting?
Thanks for your quickly response. I will have a try.
> you could try copying the distance index to a local drive and using that copy with Giraffe. The engineer resolved the server issue based on this information，Thanks for your...
Dear sir @jltsiren ，I have encountered another issue on the new server. I have constructed a pan-genome using minigraph-cactus with the default index, which includes 97samples.d2.dist, 97samples.d2.gbz, and 97samples.d2.min. Some...
I should take a look at this issue https://github.com/vgteam/vg/issues/4020. Please wait for my feedback. Thank you for your patience.
There are a total of 97 samples. In the default filtering step of Minigraph-Cactus, nodes with a haplotype count of less than or equal to 2 are removed (97samples.d2.dist). Inspired...
hap1 AB , hap2 AB too.
What do you think?
Thanks for your quickly response. > Publication information should be included in the github repos of the various projects. That would be a lot of work I think and not...