ZhangHao

Can you reinstall the latest SCP and try again? This issue may have been resolved in the latest version. If it still persists, please let me know.

This may be a parallelization issue. SCP uses a different multi-threading strategy compared to Seurat, using BiocParallel instead of future. When using SCP, do not enable future, as it may...

Apologies, the documentation for the SCP functions is still being written. To discover the available database names within the SCP package, please refer to the documentation of PrepareDB function.

SCP (v0.3.0) is not the latest version. You need to update SCP and try again.

The current version of SCP only supports Seurat versions below 5.0. Once Seurat 5.0 becomes stable, I will consider adding support for it. Therefore, for now, you have two options:...

Thank you for your comment. The numpy version used (1.21.6) was indeed outdated, but it was chosen to ensure compatibility with other Python packages. Taking into consideration the iterative updates...

While RunSCVELO by default utilizes a single thread, it should still provide acceptable speed. However, you can try accelerating velocity calculations by specifying the number of threads, such as `n_jobs=10`.

This is an issue with BiocParallel. Please try restarting a new R session before running RunDEtest.

This error is not related to SCP, it seems to be a font issue. However, I have tried to find several solutions for you. In general, you can try updating...

Of course. Currently, all integration methods in SCP are unsupervised. SCP plans to incorporate more types of integration methods.