Zak King

@jmcconn this is a good one to work on, probably related to Recon3D

I'm not quite sure, but I would also be it's an index. The formulas are certainly ambiguous as is. I'm marking this for follow up with the authors.

That makes sense to me. The source for our CHEBI IDs (http://www.metanetx.org/) does not differentiate primary vs secondary CHEBIs, so we just need to check against CHEBI for each one...

@draeger In this case, we will not replace any old IDs. Just add new ones.

Replacing both of these with 'R'

That's fine with me. I will collect them together and share with the authors

This will require some enhancements to BiGG to track the extra data. In the meantime, we recommend using the full versions of Recon3D at http://vmh.life. We will continue working to...

Thanks for helping us look at this. We did not have a lot of lead time with the model to work these issues out, so your feedback is invaluable. I...

We are basing our version on the file here, which i received from the authors of the paper: https://github.com/SBRG/bigg_models_data/blob/master/models/Recon3D.mat In that file, the group you are talking about looks like...

sorry @matthiaskoenig that we're getting off track from the original question :) We'll get to it