Zak King

MAT loading error from spaces in compartment names

7

#### Problem description In BiGG Models, we have some compartment names with spaces in them: http://bigg.ucsd.edu/models/iCHOv1/metabolites/h_im COBRApy (v0.17) can read JSON and SBML files generated with this data. But if...

Cannot export SBML when annotation is a list of lists

16

#### Problem description The JSON format allows annotations as lists of lists, but trying to export such a model as SBML causes an error. This is the case for the...

Prepend underscores for tab completion of IDs that start with a number

3

Tab completion of reaction and metabolite IDs is convenient and widely used in IPython and Jupyter. Falling back on `get_by_id` for IDs that do not match the Python variable-naming rules...

TODO should we do fns for all buttons? should also include drawing commands (e.g. map.draw_everything) so settings can be applied to the builder after loading What about _updateData? that should...

Smaller file sizes by limiting JSON float precision

1

This can decrease map size by ~15%

still need to center the pinch on the cursor might as well do https://github.com/zakandrewking/escher/issues/282 too

More ES6 classes

1

TODOs/bugs: - not zooming correctly on `yarn start`


The solution for #176 fixes pinch-to-zoom (stops zoom of entire app), but the solution breaks after a brush event, which probably resets or overrides the zoomstart listener. There could be...

e.g. ``` , gap_c,10.0 ```