yuxinPenny

ValueError: Expected object or value

2

I came up with following error while running the spore diffmod. The nanopolish eventalign and data-prep output seems no problem. Can you give some clues? Traceback (most recent call last):...

Can I see Tombo Index File

1

I want to extract the current signal when a base pass through the nanopore. i.e. the current signal value for each position on the read. It seems that this information...

Corrupted aux data for read

1

# Issue Report ## Please describe the issue: I am running dorado for base calling and alignment. The base calling can run successfully, but when doing alignment, it always raise...

io_read.seq, ref_seq and signal orientation for revserse mapping

4

Dear authors of Remora, I am trying to extract features from basecalls (io_read.seq), reference sequence (io_read.ref_seq) and signals from the io_read object generated from pod5 and bam. I am confused...

Normalization method

1

Dear authors, I was using the remora API to see the signal refinement results. After generating the IO_Read object from BAM and Pod5 file, I can query the normalized signal....