Haruka Ozaki

Is it possible to display image as png in Jupyter notebook?

4

Hi! I'm using Compose.jl to make my own plotting functions on Jupyter notebook. When a plots has many elements, rendering the vector image takes long time and the response of...

segfault error; 'memory not mapped'

3

I have a segfault error as follows: ``` devtools::install_github("Non-Contradiction/JuliaCall") library(JuliaCall) julia library(JuliaCall) > sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default...

cuffnorm says "Error: cuffdiff requires at least 2 SAM files"

1

When I run cuffnorm (v2.2.1 (4237)) on single CXB file, I received a error massage "Error: cuffdiff requires at least 2 SAM files". I found the corresponding code in cuffnorm.cpp....

Code Update Request: Avoid 'np.float' Deprecation Error in melanoma.ipynb

3

Thank you for creating such a wonderful software! I immediately installed SpatialDM and tried running melanoma.ipynb, but I got an error. https://github.com/StatBiomed/SpatialDM/blob/main/tutorial/melanoma.ipynb Here is the code cell where the error...

To avoid 'np.float' Deprecation Error in melanoma.ipynb https://github.com/StatBiomed/SpatialDM/issues/20

Error when opening a BAM file generated by HISAT2 version 2.2.0

3

I have used XAM.jl to treat BAM files. Today I came across an error when opening a BAM file generated by HISAT2 version 2.2.0. No error occurred for a BAM...