Yuka Takemon, PhD

icon indicating a website link https://www.yukatakemon.com/

icon company Michael Smith Laboratories icon location Vancouver, BC, Canada icon location Research associate @bcgsc @ubc, frequent instructor and lesson maintainer @carpentries @rstudio, and organizer @R-Ladies-Vancouver

Results 4 issues of Yuka Takemon, PhD

Error running test

4 comment

I'm rather new to python, so apologies for the naive question. I installed all the dependencies as in your tutorial but for some reason, I can't get the test to...

Gene level copy number doesn't match GDC website

Hello, I am trying to download gene level copy number data from GDC for TCGA-COAD cases using the following code. I noticed what is called "DeepDel" on the web portal...

Adding variant classifications

Hello, I am using `readMAF` to read in a csv file from the latest CCLE mutation files and noticed there were two classes that are not currently classified: Stop_Codon_Del, Stop_Codon_Ins...

Saving as .png or .pdf directly

Hello! First of all, great tool! Very intuitive and easy to use. I have a quick naive question: Is it possible to save as a .png or other formats such...