yonniejon

Results 8 comments of yonniejon

How to get labels to not overlap other chromosomes?

Thank you!!! very helpful

init_genome error?

If this is still a problem, post an update and re-open.

Workflow question

Hi, for generating bam files from fasta files you should use an alignment tool like bwa-meth or bismark on a fasta file. For clustering there is not best option, but...

issue when use `beta_to_450k`

Yes, use the init_genome command and provide your own fasta file --fasta_path /path/to/genome.fa

using two identical bedgraph files with max_value set to different values does not work

Also, there is a bug I think when I do share-y the y-axis label uses the max value of the overlayed track even though the actual value is the original...

How to resolve the issue of wgbstools mix_pat not being able to parse the hg38 genome?

does `wgbstools set_default_ref hg38 ` work?

Question about Input Format for PAT File Generation

yes bam2pat same as a bam file!

Question regarding generating bigger blocks in brain .beta files wgbstools segment

Are you using the files downloaded from the paper? I believe these files are using the hg19 reference genome while you called --genome hg38 in your command. Let me know...