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Question about Input Format for PAT File Generation

Open Sepideh89 opened this issue 7 months ago • 2 comments

Hi!

For generating the PAT files and running UXM, does the input have to be a BAM file, or is it also possible to use a CRAM file directly?

Thanks!

Sepideh89 avatar May 05 '25 16:05 Sepideh89

Works for cram files

nloyfer avatar May 05 '25 17:05 nloyfer

Could you help me with its command? bam2pat?

Sepideh89 avatar May 05 '25 20:05 Sepideh89

yes bam2pat same as a bam file!

yonniejon avatar May 25 '25 17:05 yonniejon