yonghuiying

no applicable method for "'RunHarmony'" applied to an object of class "seurat"

2

Hi all, I'm just wondering whether harmony is compatible with Seurat v2. I run vignettes exactly following the tutorial [here](http://htmlpreview.github.io/?https://github.com/immunogenomics/harmony/blob/master/docs/SeuratV2.html), only to end up with the error " no applicable...

Does normalized expression data work well?

1

Thanks for your amazing tool for deconvolution of bulk seq data. I now just want to deconvolute the TCGA bulk data based on a scRNA-seq reference data, and I have...

does normalized data input work well?

1

Thanks for your amazing tool for deconvolution of the bulk data. The manual said that it accepts raw count matrix from the scRNA-seq, I'm just wondering whether normalized expression matrix...

Is there a R version of scrublet on the way?

1

Just a suggestion. It seems that many users process scRNA-seq data using R and are not so familiar with Python. So is it possible to make a R version of...

Hello all, I've run scrublet exactly following the instruction [here](https://github.com/swolock/scrublet/blob/master/examples/scrublet_basics.ipynb), only to end up with the error 'Segmentation fault (core dumped)' after the command 'scrub.set_embedding('UMAP', scr.get_umap(scrub.manifold_obs_, 10, min_dist=0.3))'. Any suggestions?...