mHiC
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yezhengSTAT
Unfortunatly, I cannot reproduce the creation of the mappability file. Using gem-mappability, I get a .wig file with variable step size variableStep chrom=CP011454.1 Gemmatimonas phototrophica strain AP64 span=2986 1 1...
Hello, I am running some human hic data through the pipeline and step 4 is taking extremely long. At the end of step3 I have around 150M uniquely mapping pairs...
Hi, I plan using your tool to analyze HiChIP data (followed by the FithHiChIP tool). At what step and how is it possible to merge replicates (which have been checked...
Hi, I would like to test including multimappers in my HiChIP datasets which have been analyzed by HiC-Pro and FitHiChIP pipelines before. Can I somehow use .ValidPairs or .allValidPairs from...
Hi, thank you for the great program. Do you have any recommendations, advice, or considerations for using mHi-C with Hi-C datasets generated with the _in situ_ DNase Hi-C protocol (which...
Hi mHiC team, I love your program! I think that it's a really unique solution to a complex problem, and the tutorial was very easy to conduct. However, I'm now...
When executing step 4 I get the following error: ``` Traceback (most recent call last): File "~/mhic/bin/KR_norm_mHiC.py", line 468, in writeInteraction(norm_mtx, baseName, args.outdir, revFragsDic, args.chrNum, args.resolution) File "~/mhic/bin/KR_norm_mHiC.py", line 361,...
I have an issue when running Step 5 of the pipeline. This is the traceback: ``` Traceback (most recent call last): File "/work/project/ladsie_002/mHiC/s5_prior.py", line 1050, in main() File "/work/project/ladsie_002/mHiC/s5_prior.py", line...
So I have underscores in my chromosome names and the `chrList` variable is set to `"LtaP_01 LtaP_02 LtaP_03 LtaP_04 LtaP_05 LtaP_06 LtaP_07 LtaP_08 LtaP_09 LtaP_10 LtaP_11 LtaP_12 LtaP_13 LtaP_14 LtaP_15...
Hi, I was going through the tool and the article of mHiC and found that it could be the best suited tool for the polyploidy genomes with extensive repeats. Did...
