Yaroslav Halchenko

follow up to https://github.com/datalad/datalad-container/issues/144 where I tried just to kill our shim but docker container seems remain running: ```shell (git-annex)lena:~/.tmp/repro-6XkWWkE/ds000003-qc[master]git-annex $> containers/scripts/singularity_cmd: line 1: warning: wait_for: recursively setting old_sigint_handler to...

script to mirror all versions of containers from docker hub

13

e.g. immediate usecase is "backup" of all neurodebian containers from https://hub.docker.com/_/neurodebian . I only wonder if it should all be dumped here or should be a separate dataset (probably separate)....

bids/hcppipelines does not expose entrypoint, when original docker container does

1

``` (dev3) @beast:~/containers$ docker run -it --rm bids/hcppipelines --version HCP Pielines BIDS App version v3.17.0-18 (dev3) @beast:~/containers$ singularity run images/bids/bids-hcppipelines--3.17.0-18.sing --version GNU bash, version 4.3.30(1)-release (x86_64-pc-linux-gnu) ... ``` as you...

trouble running singularity in sanitized environment under /home or /tmp subdirectories

1

filed against singularity for now https://github.com/sylabs/singularity/issues/3949 ... not yet sure how to mitigate

Add https://github.com/ml-tooling/ml-workspace

2

docker containers for various use case scenarios

FOI: bats-assert

1

https://github.com/ztombol/bats-assert provides a nice collection of assertion helpers to be used in bats, similar to the ad-hoc ones I started to introduce in #27 . Would be nice to migrate...

Ability to get new containers while having all prior or used containers frozen to specific version

5

Currently it would not be possible to update from original containers dataset with the purpose to only get new containers, while keeping current ones (possibly already used in some analysis)...

Establish testing of containerized apps

2

Could probably be - regression tests - eventually some more advanced "testkraut"-like tests which annotate various steps in the execution (may be reproman's ability to trace into containers could be...

Some notes from email correspondence with @glatard on most popular boutiques ;-) There are currently 7 tools with a singularity image in Boutiques: > $ bosh search singularity > [...