Yaroslav Halchenko
Yaroslav Halchenko
stimuli BEP
As @Remi-Gau hinted by #695 , we still lack total clarity on original stimuli storage and annotation. We do have - `stimuli/` folder which, like `sourcedata/` is nohow "prescribed" for...
https://github.com/bids-standard/bids-specification/pull/1049 (and recently merged #1036) inspired me to look at re-used suffixes which ATM might have duplicate and varying specification (in terms of extensions) across different data types: ```shell $>...
#892 made the main work to detach schema handling code into an installable python package. https://github.com/bids-standard/bids-specification/pull/892/files#diff-fca7304d24a5898ab105cce4ccd5a21761e7673dbeccb692b65bc6cddef9eee7R3 lists https://github.com/bids-standard/schemacode and setup.py https://github.com/bids-standard/bids-specification/pull/892/files#diff-a2a4329d57cbccf54036da2be45bf77cf3059065fb0e856244f86d05394e3082R17 lists it as `"schemacode" . I think eventually, whenever...
to overcome possible overlap between ".json is the side car file" and ".json is the 'path' file" for nwb (see https://github.com/hdmf-dev/hdmf/pull/677#issuecomment-1085292384) the idea is to not just use `.json` but...
Initially I thought also to introduce it to behavioral data as well, since IMHO it potentially could be applicable whenever hardware might already be producing multiple files, e.g. where physio...
@robertoostenveld in https://github.com/bids-standard/bids-specification/issues/538#issuecomment-669749360 mentions that "using the inheritance principle there can be a scans.json at the top level". Current inheritance principle formulation seems to suggest that too, but documentation nowhere...
looking at https://github.com/bids-standard/bids-specification/pull/1033/files#diff-e1391ae7ff69f13355ee975c7fafc3414020f8ed7f3d26bfa92a4381429f51a0L4 and making a comment https://github.com/bids-standard/bids-specification/pull/1033/files#r838617368 where, as in many other places, we have "alternative" extensions for a file (so only one extension should be used) I also...
https://github.com/bids-standard/bids-specification/pull/1033/files reveals duplication of description for top level files in [src/03-modality-agnostic-files.md](https://github.com/bids-standard/bids-specification/pull/1033/files#diff-d9e3cba862521dd35f361952e6e6a7a4d20c5712af8715bd7d1ae38e057821ddR146) and [src/schema/objects/top_level_files.yaml](https://github.com/bids-standard/bids-specification/pull/1033/files#diff-c956e4a2decf6448a7e573bc50e93a4ea7a1af19f364b1818804a8005871f86bR24) thus begging for some `MACROS___` to just populate the .md with description from the schema. Attn @tsalo...
Complimentary to #174 although less concerned with placement and either lesions could be considered raw or derivative data (IMHO everything is derivative ;) ) ATM lesions are mentioned in two...
Might be just another reincarnation of #1335 but I have decided to file separately since error message is different helper script ```shell #!/usr/bin/env python3 import hdmf import h5py import pynwb...