Yaroslav Halchenko

Push tag(s) for previous releases (0.1.0) and cook up a fresh release

6

2b118bff49b6a872baa4fb7bc15539e3bcfd8cf6 introduced `CTK_*_VERSION` variables in 2010, not sure if that was the release though, and they never changed ever since. It would be great if an annotated tag (e.g. 0.1.0)...

fails when working through proxy (as instructed by http_proxy env var): invalid literal for int() with base 10: '3128http'

32

as of 1.6.1 (as in Debian) ``` $> echo $http_proxy http://localhost:3128 $> venv-tests/bin/nosetests -s -v datalad/crawler/nodes/tests/test_misc.py datalad.crawler.nodes.tests.test_misc.test_get_deposition_filename ... ok datalad.crawler.nodes.tests.test_misc.test_assign ... SKIP: TODO datalad.crawler.nodes.tests.test_misc.test_rename ... SKIP: TODO ---------------------------------------------------------------------- Ran 3...

Inheritance: Further Relaxation allowing multiple files per directory

1

Follow up/continuation to https://github.com/bids-standard/bids-specification/pull/1003 as suggested/discussed in https://github.com/bids-standard/bids-specification/pull/1003#discussion_r940247739 . Extracting here: For that latter case (e.g. `task-rest_bold.json` and `acq-tricky_bold.json`) we could have removed this requirement ("subsequent ... is a strict...

inheritance: "false positive" conflict among metadata files if some entities are missing

3

Originally brought up in https://github.com/bids-standard/bids-specification/issues/102#issuecomment-446833775 and discussed briefly in the https://github.com/bids-standard/bids-specification/pull/946/files#r771841807 with @Lestropie. The [Inheritance Principle (IP)](https://github.com/bids-standard/bids-specification/blob/master/src/02-common-principles.md#the-inheritance-principle) has ``` 2. For a given data file, any metadata file is applicable...

Relates to the discussions about - "fake_paths" we had with @TheChymera [ref: TODO] needing to validate file path without having a file present on the file system (as checked e.g....

NB Originally was destined to be posted as reply in https://github.com/bids-standard/bids-specification/issues/102 but then I decided to make it a separate issue. A single function cannot cover the entirety of the...

BIDS validation routine should not go under `.dotdirs`

2

Running tests for bidsschematools locally fails for me and floods the screen with WARNINGS like ```shell $> python -m pytest -s -v tools/schemacode/bidsschematools/tests/ 2>&1 | nl | tail 12496 WARNING...

con/tinuous archival of the CI logs

1

We (@jwodder primarily) developed the https://github.com/con/tinuous/ to establish archives of logs from various CIs. Unfortunately circle CI is not yet supported since we did not have a use-case yet so...

[ENH] Allow for - (dash) (and/or +) in <label>

23

I thought that we already had an issue filed for this, but may be it was just my comments in the google doc version of the BIDS specification, so filing...

Question: consistency of metadata in .nwb and bids filename/side-car - must be consistent, or allowed to be overloaded?

6

.nwb files are supported by BIDS since awhile. NWB files are hdf5 files following quite elaborate [nwb schema](https://github.com/NeurodataWithoutBorders/nwb-schema/) which includes metadata which is also covered by BIDS itself, such as...