yangxiaofeill

fragment name issue of .allValidPairs file

3

Dear colleagues, Thanks for your excellent tool. After HiC-Pro finished my hic data, I checked the `.allValidPairs` and found some fragment IDs are not matched with the bed file generated...

Hi author, I tried to use hic_hiker to refine the 3d-DNA results of our plant genome. However, the required files include the `.sam` file by `bwa mem $ref $3d_DNA.final.fasta`. Our...

Hi author, I tried HiCAssembler, however, there are some errors like: ``` Scaffolds:['ScaffHiC_424/1', 'ScaffHiC_636/2', 'ScaffHiC_424/2', 'ScaffHiC_564'] DEBUG:HiCAssembler:Removing weak edge in path connecting two hic-scaffolds: edge: ('ScaffHiC_636/2', 'ScaffHiC_424/2'), weight: 52731.08417428207 Traceback...