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new species without reference genome

Open yangxiaofeill opened this issue 4 years ago • 0 comments

Hi author, I tried to use hic_hiker to refine the 3d-DNA results of our plant genome. However, the required files include the .sam file by bwa mem $ref $3d_DNA.final.fasta. Our sequenced genome is a new species, that is to say, we haven't a reference genome. How to solve this problem?

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yangxiaofeill avatar May 08 '20 08:05 yangxiaofeill