Xu Zou
Xu Zou
During installation (from main branch with pip install .), it reports error: ‘cudaDriverEntryPointQueryResult’ was not declared in this scope on line 98 of transformer_engine/common/util/cuda_driver.cpp 98 | cudaDriverEntryPointQueryResult driver_result; I try...
There seems to be a large KP.3.1.1+S:S31F branch, while KP.3.1.1 shall have S:31del. That branch is driven by Denmark seqs which do not handle S:S31del well. When Querying C12616T, A13121T,...
XDV.1+C28657T+C9430T,del21653_21655(S:S31del) GISAID query: C28657T, C9430T,del21653 No. of seqs: 3(China 1 South Korea 2) This is the 1st time I see a branch with S31-+S:F456L without R346T or Q493E. First: EPI_ISL_19273087,...
Successor issue of https://github.com/sars-cov-2-variants/lineage-proposals/issues/991 > Anything with >5 reversion(refer to the last checkpoint ,usually a designation) or >20 private mutations(distance to the last node) may be removed by usher. However...
There seems to be a KP.3.3/XDV.1 3-breakpoint recomb in Japan. KP.3.3--XDV.1--KP.3.3--XDV.1 Breakpoint 1 between 13340 and 15450 Breakpoint 2 between 19327 and 22927 Breakpoint 3 between 23040 and 23970 Additional...
KP.3.1.1+G2890A+A23416T+A23370G(S:N603S) GISAID query: A23370G, G2890A, A23416T No. of seqs: 10(USA 3(2 from South Korea), Spain 5 France 1 Netherlands 1) First: EPI_ISL_19322381,Spain, 2024-6-30 Latest: EPI_ISL_19324691, USA from South Korea, 2024-7-31...
There seems to be a KS.1.1/JN.1* recombinant, with KS.1.1 Spike ( except for S:A1087S>A reversion) KS.1.1--JN.1 Breakpoint between 22929 and 24820 Additional mutations: C6701T, C19716T, T25510C, C29311T Orf1a:L2146F, Orf3a:S40P C6701T,...
LU.1+C13381T+C6312T(Orf1a:T2016I)+G22103A(S:G181R) GISAID query: G22103A, C6312T, C13381T No, of seqs: 13(USA 4 Guatemala 9) First: EPI_ISL_19256362, Guatemala, 2024-5-29 Latest: EPI_ISL_19325073, Guatemala, 2024-7-15 [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_63813_6d9760.json?label=id:node_5531545) 
JN.1.16.1+S:T572I(C23277T) Given the extreme convergence I cannot find a query to describe exactly JN.1.16.1+S:T572I, and they most likely emerged separately. There are currently 3 major branches, C12073T, C24466A, and G5617T...
LQ.1.1+A23598G(S:K679R) GISAID query:A23598G, C22311A,C22377A No. of seqs: 6(USA 5 Canada 1) First: EPI_ISL_19250928, USA, 2024-5-31 Latest: EPI_ISL_19300631, USA, 2024-7-21 I'm unsure about the Irish seq. It seems to have S:250...