lineage-proposals
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JN.1.16.1+S:T572I(50 seqs=31+9+10(additional S:S31del))
JN.1.16.1+S:T572I(C23277T)
Given the extreme convergence I cannot find a query to describe exactly JN.1.16.1+S:T572I, and they most likely emerged separately. There are currently 3 major branches, C12073T, C24466A, and G5617T branch. They may or may not be independent branches. The sum of the seqs is 40.
GISAID query for 12073T branch : C23277T,T22928C,G22599C,C12073T GISAID query for 24466A branch: C23277T,T22928C,G22599C,C24466A GISAID query for 5617T branch (FULL QUAD + Orf9b:D16G): C23277T,T22928C,G22599C,G5617T
No. of seqs: 21(Sweden 2 Slovenia 1 Japan 2 Ireland 2 France 1 UK 13)
First: EPI_ISL_19135064, Japan, 2024-4-30 Latest: EPI_ISL_19225376, UK, 2024-6-18