KS.1.1/JN.1* recombinant (14 seqs, 7 countries)

[xz-keg]

There seems to be a KS.1.1/JN.1* recombinant, with KS.1.1 Spike ( except for S:A1087S>A reversion)

KS.1.1--JN.1

Breakpoint between 22929 and 24820

Additional mutations: C6701T, C19716T, T25510C, C29311T

Orf1a:L2146F, Orf3a:S40P

C6701T, C19716T from a KS.1.1 branch, One of T25510C, C29311T from a JN.1* branch, the other is private. (There exists a KP.3.2.3 branch containing both, but that brings unnecessary G24872T so not possible)

GISAID query: T25510C, C29311T,C19716T,T3565C No. of seqs: 6(USA 1 Netherlands 1 South Korea 2 Ireland 1 Israel 1)

First: EPI_ISL_19257990, South Korea, 2024-6-17 Latest: EPI_ISL_19300800, Israel, 2024-7-21

usher