Xu Zou

JN.1.45+C26606T+T22119C(S:F186S) This one appears in the limited data of 5 distant provinces in China, suggesting its widespread despite number of seqs is not big, GISAID query: C26606T,T22119C,G18756T No. of seqs:...

3-Breakpoint GJ.1.2/JN.3.2.1 recombinant (8 seqs, 4 countries, 3 with 2-nuc S:1143F)

14

Previously there was a potential 3-BP GJ.1.2/JN.3.2.1 recombinant in #991, and now it gets company in another country. JN.3.2.1--GJ.1.2--JN.3.2.1--GJ.1.2 Breakpoint 1 between 2940 and 3430 Breakpoint 2 between 11043 and...

JN.1.32+2-nuc S:1143F(18 seqs, 5 countries)

3

This 2-nuc S:1143F is appearing in multiple lineages now. JN.1.32+C9803T+C24989T(S:L1143F) GISAID query: C9803T, C24989T,C24990T No. of seqs: 5(Australia 2 South Korea 2 Indonesia 1) First: EPI_ISL_18879878, Indonesia, 2024-1-17 Latest: EPI_ISL_19028190,...

KP.2+Orf1b:V1420M, Orf8:G50*(13 seqs, 5 countries, Sweden apparently high prevalence in last weeks)

2

KP.2+G28041T,G18025A (Orf1b:V1420M, Orf8:G50*) GISAID query: G28041T,G18025A No. of seqs: 6(USA 4(2 from Qatar), Australia 1 New Zealand 1) First: EPI_ISL_18965928, USA, 2024-2-16 Latest: EPI_ISL_19075630, USA from Qatar, 2024-4-30 [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_56ef6_e03c90.json?label=id:node_6975553) 

Another JN.1+S:1143F(20 seqs, 6 countries)

2

JN.1+C6145T+C20451T+C22498T+C24989T(S:L1143F) GISAID query: C24989T,C22498T,C20451T No. of seqs: 18(South Korea 3 Mauritius 2 France 2 Spain 4 Portugal 1 China 6(Shanghai,Taiwan, Shanxi, Sichuan)) First: EPI_ISL_18821834, 2023-11-29, Mauritius Latest: EPI_ISL_19090920, 2024-4-29, Taiwan...

JN.1.22/XDD.1 recombinant(27 seqs, 2 countries, 21% Galicia, 2 with S:F456L)

8

There seems to be a new recombinant which is best explained by XDD.1/JN.1.22 recomb. XDD.1+A5720G(rev),A6183G,T6541C(rev),C13019T,G12111A,C19164T Orf1a: S1819G(rev), S3949N XDD.1--JN.1.22--XDD.1 Breakpoint 1 between 3566 and 5719 Breakpoint 2 between 13020 and...

One more JN.1+S:S31F(33 seqs, 11 countries)

6

JN.1+T28618A+C21654T(S:S31F) GISAID query: T28618A, C21654T No. of seqs: 18(Vietnam 1 Singapore 1(from Vietnam) USA 3 Canada 1 Australia 13) First: EPI_ISL_18909571, Vietnam, 2023-12-25 Latest: EPI_ISL_19028257, Australia, 2024-3-19 [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice22_genome_test_40d28_e7ba20.json?label=id:node_6950602) 

HK.3.2+Orf1a:G2342E, Orf3a:I35T, Orf8:M1L+S:T51I(60 seqs, 2 countries)

3

HK.3.2+C1348T,G7290A,T25496C,A27894T (Orf1a:G2342E, Orf3a:I35T, Orf8:M1L)+G7393A,C21714T(S:T51I) Sibling of HK.3.2.2, both having the Orf8 start codon destroyed. GISAID query: A27894T, G7393A,C21714T No. of seqs: 36(Japan 35 Australia 1) First: EPI_ISL_18740745, Japan, 2023-12-14 Latest:...

KP.1.1+Orf1b:L2213F+S:N185del, F186I(22 seqs, 11 countries)

3

It seems that other than KP.1.1.1(S:K182N), other seqs on the Orf1b:L2213F branch of KP.1.1 have another NTD mutation set that usher doesn't display. KP.1.1+C20104T(Orf1b:L2213F)+del22115_22117,T22118A(S:N185-, F186I) GISAID query: T22926C,C7113T,T22118A No. of...

KP.2+S:A688V(95 seqs, 17 countries)

11

KP.2+C23625T(S:A688V) GISAID query: C23625T,G22599C,G17334T No. of seqs: 4( Canada 1 USA 3(1 from France, 2 from UAE)) First: EPI_ISL_18999311, 2024-3-8, USA from France Latest: EPI_ISL_19032187, 2024-3-22, Canada [usher](https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_52315_27b5d0.json?branchLabel=Spike%20mutations&label=id:node_6961831&showBranchLabels=all)