3-Breakpoint GJ.1.2/JN.3.2.1 recombinant (8 seqs, 4 countries, 3 with 2-nuc S:1143F)

[xz-keg]

Previously there was a potential 3-BP GJ.1.2/JN.3.2.1 recombinant in #991, and now it gets company in another country.

JN.3.2.1--GJ.1.2--JN.3.2.1--GJ.1.2

Breakpoint 1 between 2940 and 3430 Breakpoint 2 between 11043 and 12788 Breakpoint 3 between 28210 and 28957

Additional mutations: A2443G, C3876T, A6646G, T6747C, T10723C, G19327T,C23191T

Orf1a:A1204V, L2161S, Orf1b: A1954S

T6747C,G19327T,C23191T are private mutations A2443G from a JN.3.2.1 branch C3876T,A6646G,T10723C from a GJ.1.2 branch

GISAID query: A17637G, T22928G, C7819G No. of seqs: 3(UK 2 Luxembourg 1) EPI_ISL_18969540,18969543, UK, 2024-2-26 EPI_ISL_18948961, Luxembourg, 2024-1-15

GISAID query for S:1143F branch: A17637G, T22928G, C7819G, C24989T (2 seqs)

This recomb shows that recombs with 3 potential BPs can be real.

usher