Zhougeng Xu

ERROR: Raw TIR results not found in Fhispida.fasta.mod.EDTA.raw/Fhispida.fasta.mod.TIR.raw.fa

5

Hi, shujun I recently run the EDTA pipeline(v2.0.1) on the Ficus hispida using the following command > As the EDTA was running successfully on my arabidopsis species, the pipeline was...

Enhancement of CPU/juicer.sh in error judgement of genomePath

1

**Describe the bug** In `https://github.com/aidenlab/juicer/blob/master/CPU/juicer.sh`, it use ` if [ -z "$genomePath" ]` to judge whether the genomePath is set or not , but even you set the unexisted file...

non-numeric argument to binary operator

1

I want to show all sequence in one page, but the following code will not work ```r nt_seq

I write a `edit-fasta-according-to-new-cprops.py` which do the same thing as `edit-fasta-according-to-new-cprops.awk` and generate the same results. I have used `cmp` to compare the results of edit-fasta-according-to-new-cprops.py and edit-fasta-according-to-new-cprops.awk .The results...

Compile error: no matching function for call to ‘safeTestForEach(

1

I use the following command to compile this software ``` git clone https://github.com/ggonnella/gfaviz cd gfaviz/ qmake-qt5 make ``` And an error throw out ``` g++ -c ogdf/basic/extended_graph_alg.cpp -std=c++11 -I. -O3...

ALLHiC optimize可以跳过GA吗

2

我在使用ALLHiC组装简单的二倍体时发现，optimize这一步可能会将原来正确的朝向搞错 这是使用optimize默认参数绘制的热图  根据信号强弱变化，左下角的方向可能是反了  于是我试着optimize 用 --skipGA跳过GA步骤结果绘制的热图  结果可能更加符合预期 我想问的是 1. GA步骤是如何根据clm文件确定contig的朝向呢？ 2 GA步骤是否是必须的？

Question about the input of `pyscenic ctx`

1

Hi, Could you please give a further instructions on the **database_fname** of `pyscenic ctx`, as I encountered an error when use following command base on the [turtorial]( https://github.com/aertslab/SCENICprotocol/blob/master/notebooks/PBMC10k_SCENIC-protocol-CLI-tracks.html) ```bash pyscenic...