Rebecca

After adjusting the parameters based on the information from the Hifiasm.log file, the issue of "phased assembly is much larger than the estimated genome size" still persists.

1

Hello, When assembling the genome of a species using HiFi data with hiFiasm, I encountered a peculiar situation. The genome size of my species is approximately 1.1 G. Following your...

How to get the unique matching path for each read

6

Hi, Thanks for the clear documentation and awesome tool. I would like to get the unique matching path for each read.But through the following code, I saw that in the...

How to infer different species-level abundances based on strain-level abundances

5

Hi! Thanks for the clear documentation and awesome tool. I have read your explanation about Strainscan, and it seems that it is used to analyze the abundance of each strain...

[BUG]For HiC data, the size of SAM files outputted using Chromap is much smaller compared to those from BWA-MEM

4

Thank you for providing such a useful tool . **Describe the bug** I have a set of HiC data and I would like to split it by chromosome. I aligned...

Thank you very much for providing such useful assembly software！ The hifiasm version I am using is 0.19.8-r603 I am trying to assemble a diploid genome, first using the following...

The process of polishing causes a significant decrease in genome size.

8

Hello, thank you for providing such a useful assembly software. I have a question and would like your help. After nextpolish polished my genome file, my genome size was reduced...