GraphAligner
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How to get the unique matching path for each read
Hi,
Thanks for the clear documentation and awesome tool.
I would like to get the unique matching path for each read.But through the following code, I saw that in the output gaf file, many reads correspond to multiple matches. Is there any way to filter out the best matching results?
I hope you can help me to address it effectively.
My command
GraphAligner -g all_merge_W.gfa -f reads.fq.gz -a LR.gaf -x vg -t 64