kai

Finilizing :tail: +: invalid number of bytes

27

Hi, I used 3d-dna to assembly genome, there were some strange outputs. **1**. The *FINAL.fasta file contain a lot of empty contigs, such as NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >HiC_scaffold_7 >HiC_scaffold_8 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN...

How to generate xyz.blast file for MCScanX using the target nuclotide sequences and genome ?

2

Hi, Yupeng I have successfully installed MCScanX. The xyz.blast file was generated by command `blastall -i sim.cluster.fasta -d DSim_pilon.fasta -p blastn -e 1e-10 -b 5 -v 5 -m 8 -a...