kai

Results 6 comments of kai

Finilizing :tail: +: invalid number of bytes

command bash ${dir}/run-asm-pipeline.sh ${juicer}/references/DpsePacBio.fasta ${juicer}/aligned/merged_nodups.txt

Finilizing :tail: +: invalid number of bytes

Thank you for your reply. my bash version is "GNU bash, version 4.2.46(1)-release (x86_64-redhat-linux-gnu)" what files do you need me to provide? Is it a problem caused by my draft...

Finilizing :tail: +: invalid number of bytes

Hi Olga, I tried your new branch. No warnings like ":( Assembly file does not match cprops file. Exiting!“ this time. But the log file still had some mistakes, it...

Finilizing :tail: +: invalid number of bytes

Hi Olga, I tried your new version and the result seemed good. But the N50 of the output contigs was not as high as I imagined. It finally generated 700+...

How to generate xyz.blast file for MCScanX using the target nuclotide sequences and genome ?

the head of xyz.blast file I generated before tig00001719|arrow|pilon:11858-35596(+) tig00001719|arrow|pilon 100.00 9759 0 0 2619 12377 14477 24235 0.0 1.892e+04 tig00001719|arrow|pilon:11858-35596(+) tig00001719|arrow|pilon 100.00 3018 0 0 14771 17788 26629 29646...

How to generate xyz.blast file for MCScanX using the target nuclotide sequences and genome ?

Or MCScanX can only handle blastp output ?