metaerg
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xiaoli-dong
Hi! I have run the entire pipeline but found that it failed in the data/all.gff file creation step and thus all downstream steps. ``` Writing all.gff file to 7-Metaerg/data print()...
Hi there, when I run metaERG I keep getting errors, and this latest one seems to be involving the creation of the arc.tblout file and the tRNA.masked.fna file. For some...
The current docker image hosted in Docker hub dates from 2019-10-31. The code has evolved a great deal since then, including changes to the Dockerfile. It would nice if you...
Hello, I get this error when I try to run metaerg unning: diamond blastp -k 1 --quiet -k 1 --masking 1 -p 8 -q metaerg.pl_10162019/tmp/cds.faa -d /hpc-home/ravia/tools/metaerg/db/diamond/uniprot_sprot -e 1e-05 --tmpdir...
Hi, I encountered an issue > [Thu Nov 25 09:32:38 2021] Running: /services/tools/perl/5.20.1/bin/perl /services/tools/metaerg/1.2.3/bin/output_reports.pl -d /home/people/dinghe/ku_00039/people/dinghe/metaergDB/db -g metaerg_out/data/all.gff -o metaerg_out -f metaerg_out/GAGA-0336.fna > 20 use File::Path qw(make_path remove_tree); > Unknown...
Hi, I met a problem with quick installation. After git clone, I tried running`metaerg/bin/setup_db.pl -o ~/databases/metaerg_db -v 132`, and it halted here showing: ` [Wed Nov 17 13:42:56 2021] Running:...
[Thu Dec 31 12:50:05 2020] Running: /home/phixgen/MinPath/MinPath.py -any jk_2/data/cds.gene2ec.mapping.txt -map ec2path -report jk_2/data/cds.gene2ec.minpath -details jk_2/data/cds.gene2ec.minpath.details > /dev/null 2>&1; [Thu Dec 31 12:50:11 2020] Writing tabular format summary output to jk_2/data/...
After installation MetaErg with docker, I tried to run it with default options as in Readme, but error appears: ``` docker run --shm-size 2g --rm -u $(id -u):$(id -g) -it...
Just ran metaerg on the included example files to try to get a sense of what a normal output looks like, but when it got to the outputreports step it...
I encountered a little problem when using the software, I hope to get your help. When i run this `setup_db.pl -o /data/ -v 138.1` I am getting an error of:...
