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Downloading pre-built databases halted

Open EmmettPeng opened this issue 3 years ago • 0 comments

Hi,

I met a problem with quick installation. After git clone, I tried runningmetaerg/bin/setup_db.pl -o ~/databases/metaerg_db -v 132,

and it halted here showing:

[Wed Nov 17 13:42:56 2021] Running: cat /home/pengxi/databases/metaerg_db/tmp/arc_16SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/arc_23SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/arc_5SrRNA.hmm > /home/pengxi/databases/metaerg_db/db/hmm/rna/arc.hmm;cat /home/pengxi/databases/metaerg_db/tmp/bac_16SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/bac_23SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/bac_5SrRNA.hmm > /home/pengxi/databases/metaerg_db/db/hmm/rna/bac.hmm;cat /home/pengxi/databases/metaerg_db/tmp/euk_18SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/euk_28SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/euk_5_8SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/euk_5SrRNA.hmm > /home/pengxi/databases/metaerg_db/db/hmm/rna/euk.hmm; sh: 1: cannot create /home/pengxi/databases/metaerg_db/db/hmm/rna/arc.hmm: Directory nonexistent sh: 1: cannot create /home/pengxi/databases/metaerg_db/db/hmm/rna/bac.hmm: Directory nonexistent sh: 1: cannot create /home/pengxi/databases/metaerg_db/db/hmm/rna/euk.hmm: Directory nonexistent [Wed Nov 17 13:42:56 2021] Could not run command:cat /home/pengxi/databases/metaerg_db/tmp/arc_16SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/arc_23SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/arc_5SrRNA.hmm > /home/pengxi/databases/metaerg_db/db/hmm/rna/arc.hmm;cat /home/pengxi/databases/metaerg_db/tmp/bac_16SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/bac_23SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/bac_5SrRNA.hmm > /home/pengxi/databases/metaerg_db/db/hmm/rna/bac.hmm;cat /home/pengxi/databases/metaerg_db/tmp/euk_18SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/euk_28SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/euk_5_8SrRNA.hmm /home/pengxi/databases/metaerg_db/tmp/euk_5SrRNA.hmm > /home/pengxi/databases/metaerg_db/db/hmm/rna/euk.hmm;,

Anyone can help with this? Thanks!

Emmett

EmmettPeng avatar Nov 17 '21 13:11 EmmettPeng