William Gordon

gnotate: converting BED to VCF

1

Hi Brent, I'm working on setting up a slivar pipeline with @jxchong; we have a number of annotation files that are bed formatted rather than vcf/bcf. Do you have a...

Error when converting AnnotSV TSV to VCF (single sample)

9

Hello, This is another issue relating to the AnnotSV -> variantconvert handoff for VCF creation. I have created an [issue ](https://github.com/SamuelNicaise/variantconvert/issues/31) in the variantconvert github and am linking it here...

Hi Brent, Following up on #158, I was wondering if it might be possible to have some additional diagnostics provided when duktape errors or warnings are thrown. Specifically, in my...

Hello, I believe I've spotted an error in the [case-control documentation](https://github.com/Illumina/ExpansionHunterDenovo/blob/master/documentation/07_Case_control_analysis.md). The optional parameter `--test-method` should in fact be `--test-params`.