Karen Wong

Incorrect self-alignment hit

3

Code to reproduce (tried with v2.0.6 and v2.0.14): ``` echo -e ">test_gene\nMAAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA" > test.fasta diamond makedb --in test.fasta --db test.dmnd diamond blastp -q test.fasta -d test.dmnd ``` Output of blastp...

Parameterize truncation_seq_length?

1

Thanks for providing such a great tool for a community! I pulled the latest repo and noticed that docking would fail on larger structures. I then traced it to [this...

JSONDecodeError when using a small background list

15

### Setup I am reporting a problem with GSEApy version, Python version, and operating system as follows: ``` >>> import sys; print(sys.version) 3.11.9 | packaged by conda-forge | (main, Apr...