Karen Wong
Karen Wong
It's unclear to me if that is a potential bug or the expected output of diamond's default behavior. Without using `--masking 0`, only a third of the sequence (201bp) got...
I'm still able to reproduce the same error when I swap the gene set to `MGI_Mammalian_Phenotype_2017`: ``` enr_bg = gp.enrichr(gene_list=gene_list, gene_sets=['MGI_Mammalian_Phenotype_2017'], # organism='human', # organism argment is ignored because user...
Huh did you find the following record from your output? And I suppose the json module in python doesn't support decoding infinity ``` 35,"MP:0008729 decreased memory B cell number",3.392253592257852E-5, Infinity,...
We are on the same version. How about simplejson? ``` (hx) (base) karenwong@Karen-Wong-Macbook hx % pixi list | grep requests requests 2.32.3 pyhd8ed1ab_1 57.3 KiB conda requests (hx) (base) karenwong@Karen-Wong-Macbook...
Thanks for checking! Would you be able to support simplejson as well? According to [this](https://simplejson.readthedocs.io/en/latest/#simplejson.JSONDecoder), `allow_nan` defaults to `False`...
Thanks for the quick reply! The [simplejson module recently updated the default value of allow_nan from True to False in its latest version](https://github.com/simplejson/simplejson/releases/tag/v3.19.1). Supporting `NaN`, `Infinity`, and `-Infinity` is actually...
Does the following work? ``` if 'simplejson' in requests.compat.json.__name__: data = response.json(allow_nan=True) else: data = response.json() ```