Marnin Wolfe

icon indicating a website link wolfemd.github.io/ icon indicating an email [email protected]

icon company Wolfe Lab icon location Auburn University icon location Quantitative Genomics. Plant Breeding. Sustainable Design. Reproducible Methods. Ecology & Evolution, Ph.D.. Next Generation Cassava Breeding.

Results 3 issues of Marnin Wolfe

VCF download contains duplicate column names (even when not requested)

1 comment

To reproduce, on Cassavabase: 1. Using the Wizard, make a list of accessions in a set of trials-of-interest _and_ in the genotyping protocol (IITA Dart-GBS Aug 2021). 2. Validate and...

Type: Bug
Priority: High

Plants per plot metadata upload + "net plot" or "expected max number harvested" meta data field needed

2 comment

Cassavabase has a metadata field called "plants per plot" which can represent the number of stands planted per plot. However, that field is mostly if not entirely empty across breeding...

Type: Feature Request
Priority: High

Genetic map positions matching genotyping data download

Feature Idea: Imputation, prediction of cross variance and mate selection use genetic map coordinates to compute recombination probability matrices. Ideally, users could download a genotype dataset (VCF or dosage) _and_...

Type: Feature Request