Scott White

Remove 'root' gate from GatingStrategy gate tree

1

Replace 'root' with None for specifying gates at the root level. This makes the gate path tuples one item shorter and eliminates the issue of using the reserved word 'root'...

Create a new SampleCollection class for performing basic pre-processing operations on multiple samples. This would basically mirror the API of the Sample class but for multiple samples. It would be...

Create a FAQ

2

Create a FAQ document. Questions to include: * Why was FlowKit developed? * Why doesn't FlowKit have a Graphical User Interface? * Why do my FlowJo results differ from FlowKit?

Implement tagging for Sample class for use with the new SampleCollection class. A Sample should be able to have multiple tags for filtering and retrieving groups of samples. Should tags...

Replace all matplotlib-based plots with Bokeh

3

This would remove both the matplotlib and seaborn dependencies. Bokeh is also faster and allows for interactivity.

The networkx package is used to process gates in order of their dependencies (i.e. parent gates processed before their children). This is done through the `topological_sort` function. Unfortunately, this means...

Change Workspace.summary to have samples as rows (not groups)

1

The group concept in a FlowJo workspace is somewhat odd. Each sample can have only one gate tree and it is tied to the sample regardless of which groups the...

Given a Sample instance, generate a set of transforms for every channel. The set would create linear transforms for scatter & time channels and logicle transforms for fluorescence channels. The...

Community Input - Subscribe to get notifications

1

# FlowKit Community Input Hello FlowKit users! This issue is a way to get feedback from the community on specific aspects of FlowKit development. GitHub doesn't have a good way...

Error when module's qualified name is different from the module file location

3

Hi Kale, Thanks for your work on this project, I find it very useful for documenting large classes. I have a [project](https://github.com/whitews/FlowKit) where, via `__init__` files, the qualified names differ...