Szonja Weigl

Results 12 comments of Szonja Weigl

Thank you for raising this, I started working on a PR that should fix this behavior.

@oruebel In `docs/gallery/domain/brain_observatory.py` `ImageSeries` are being created with timestamps of `[0]`, I tried to fix it but I don't have currently access to the data that is being used here...

> My point is just that some people regardless of the corruption status of their data may want to try to salvage something. That doesn't mean we have to support...

We just discussed with @bendichter that this is more likely a pynwb validation error, I'll open an issue there.

@oruebel @CodyCBakerPhD Thank you for helping figuring out this issue, ``` nwbfile.get_imaging_plane("ImagingPlane").device ``` returns ``` Miniscope abc.Miniscope at 0x5828172864 Fields: compression: FFV1 deviceType: Miniscope_V3 frameRate: 15FPS framesPerFile: 1000 gain: High...

you're right @CodyCBakerPhD ! ```python from pynwb import validate from pynwb import NWBHDF5IO nwbfile_path = "C6-J588-Disc5.nwb" with NWBHDF5IO(nwbfile_path, load_namespaces=True) as io: print(validate(io=io, verbose=True)) ``` returns ``` [ImagingPlane (general/optophysiology/ImagingPlane): missing data...

Thank you @rly , I uploaded a small file.

@rly do you have a solution how to fix this? This validation error is triggered for any file that is using `ndx-miniscope`, so this very much needs a fix. Is...

> I think mainly because of the spikes files but it is a guess. > Szonja could you check the speed when removing spikes files ? @samuelgarcia I don't actually...

Thank you @edeno, I didn't notice an issue is already created for this. I can close this one, and continue the discussion in the other issue if you want.