Bill Duncan

I heard back from a dental colleague. It doesn't make sense to say someone w/o teeth has dental caries. So, having teeth would be a necessary but not sufficient condition...

> The discussion reflects a broader OBO Foundry debate about maintaining philosophical consistency versus accommodating biomedical practicality Yes. There is a long history of this debate in the OBO Foundry....

> accommodating biomedical practicality Sure ... I suppose that depends on what is meant by "biomedical practicality". However, I have no desire to engage in a long debate concerning the...

@csbjohnson We have already classified [dental caries](https://www.ebi.ac.uk/ols4/ontologies/ohd/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOHD_0000031) in the OHD. The definition has axioms relating dental caries to [oral microbial dysbiosis](https://www.ebi.ac.uk/ols4/ontologies/ohd/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FOHD_0000420?lang=en). Here is the link the preprint describing our work:...

> The other is just to declare the range in your custom annotation model I can try experimenting with this. The use case that motivated this issue is a bit...

I've started reviewing. So far here is what I've done using `python 3.11.8` and `pip` version `24.0`. I am running code on an a MacBook Pro with an Apple M1...

@editorialbot generate my checklist

@arfon I ran the `@editorialbot generate my checklist` command. See [above](https://github.com/openjournals/joss-reviews/issues/6370#issuecomment-2018565334). Where is the checklist generated?

@KennethEnevoldsen I ran the command `pip install "augmenty[all]"`. This worked fine. When I run ```python nlp = spacy.load("en_core_web_md") docs = nlp.pipe(["Augmenty is a great tool for text augmentation"]) entity_augmenter =...

TBH, I hadn't though much about what I meant by "adjust representation" ;). I was following up on the reviewers suggestion (which I thought was reasonable). Creating mappings(close match, exact...