Bill Duncan
Bill Duncan
Perhaps you can update the docs for building [user-defined functors](https://souffle-lang.github.io/functors). I am working on a Mac with OSX 11.6 (Big Sur) and an Intel Core i9 processor. When trying to...
I have a number of OWL ontologies that I work with. Do you have a tool for converting OWL to TypeDB? I can try making my own, but wanted to...
I am needing to convert the results from a SPARQL query into a pandas data frame. Here is the function I have written for this: ``` import pandas as pds...
When HermiT is used to reason over http://purl.obolibrary.org/obo/envo/releases/2020-06-10/envo.owl (current release), there are errors of the form: ``` An error occurred during reasoning: Non-simple property 'BFO_0000051' or its inverse appears in...
Fixes #1102 Opening PR for contamination pattern
The hierarchies differ in the `envo-basic.obo`, `envo-basic.json`, and `envo-basic.owl` files. For example, here is hierarchy for `lake` in `envo-basic.obo`:  The corresponding json in `envo-basic.json` does not have a `"is_a":...
I am wanting to use the `dcterms` library directly in an ontology like so: ``` import_group: products: - id: dcterms mirror_from: http://protege.stanford.edu/plugins/owl/dc/terms.owl ``` When running `seed-via-docker.sh -C configs/foo-odk.yaml` I get...
When running command `./seed-via-docker.sh -d po -d ro -d pato -u cmungall -t "Triffid Behavior ontology" triffo`, I received the error: ``` raceback (most recent call last): File "/tools/odk.py", line...
We have dataset that is submitted as json, but it contains `null` values. E.g.: ```json { "bin_name": "bins.1", "gtdbtk_domain": null, } ``` In the yaml, we define the bin object...
[Pandera](https://pypi.org/project/pandera/) is a PyPI project for validating pandas dataframes. We can/should add functionality to create the pandera models from linkml. cc @cmungall @sierra-moxon @sujaypatil96