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Thanks for the quick response. I set plotTree=TRUE, but the tree I got have branches kind go mixed together. I tried to specify normal cells in the pipeline but still...

Hi Just follow up on this. I got the exactly the same clonal tree as in tutorial. But in my case sub clones gather together and I see multiple gray...

No worries. Thanks for making changes. I reinstalled SCEVAN and reran the same data, but got errors that stopped the running Error in 1:totChr : NA/NaN argument Calls: ... subcloneAnalysisPipeline...

It worked, thank you very much. One more question about the interpret ion of this figure. According to the manuscript, the length of those branch represent the distance to the...

 In this plot, part of the sub clone label are masked.

Hi, Just wanna check if this has been fixed? Some labels are not fully shown. Thanks

I reinstalled it but still get the same as above. Also for some sample, I didn't get clone tree, OncoHeat etc. I wonder what the problem is. Thanks

And the version of SCENIC is 1.2.0

Thanks for comments. Yes, realized it had been installed on cluster

@ryao-mdanderson Hi, I wonder if you have run scenic successfully run it on cluster. I got into problem at AUC step as below. Any thoughts on this? Thanks much! ![Screen...