Jakob Wasserthal
Jakob Wasserthal
To combine the segmentation masks of each class into one nii file containing all masks, TotalSegmentator provides a convenient `--ml` flag that can be used during the segmentation process. By...
Between v1 and v2 the instances should be identical. v2 contains more meta data and the age might have changed slightly because we add noise to it for better anonymisation....
Thanks for your pull request. I agree that the error handling can be improved. I can use a (custom) exception and then catch it to show the error message (I...
Is it possible to build a custom exception which I can raise, but which does not print the stack trace when raising it? I did some testing but did not...
That is correct. I only wonder how I can exit after catching the exception without calling sys.exit()? If I understand you correctly you want to avoid using sys.exit().
For me it works for nnunetv2==2.3.1. There are problems with nnunetv2==2.3. Can you try with 2.3.1? If this does not work: Which totalsegmentator version are you using and how does...
This can happen on very large images. Does it work on a smaller image?
You have to remove them yourself. Or you can only select a reduced number from the beginning by setting the parameter `roi_subset`.
The input needs to be a complete 3d volume. A single .dcm file is only a single 2D slice. Therefore you need a folder with all the slices. This folder...
This might be a problem with cupy? Can you try to remove cupy from your environment (e.g. `pip uninstall cupy`) and try again?