Jakob Wasserthal
Jakob Wasserthal
Maybe some of the nnU-Net processes run out of memory. Does it work with a smaller image?
The segmentations are not always pixel perfect. At the end of a image the segmentation can go into the black a bit. And sometimes segmentations can be a bit noisy....
Thanks for pointing this out. Unfortunately I am not very familiar with fury and vtk (those libraries provide the actor). I tried a few things but that did not change...
I did the same and i get this output: 
It seems that quite recently pytorch finally added Conv3d to the nightly version. I pushed a commit to master to allow "mps" as device argument. I did not have a...
It seems that nnUNnet also uses ConvTranspose3D which is not yet supported. So mps is not working for now.
Unfortunately I can not reproduce this error. Therefore I am not sure what is going wrong.
Certainly! You can accomplish this with a Python script using the `nibabel` library to read the nifti file and `Pillow` (PIL) or `matplotlib` to save each slice as a BMP...
If you want to use totalsegmentator v1 you should use v1.5.7. Does it work when you try installing `pip install --upgrade totalsegmentator==1.5.7` Does it work after deleting `~/.totalsegmentator`? This will...
It seems that the background worker died. Maybe it ran out of memory because your image is very big. Have you tried with a smaller image?