Jakob Wasserthal
Jakob Wasserthal
Which TractSeg version are you using? I am not really sure what the problem might be. Would it be possible to share the dataset so I can try to reproduce...
Unfortunately I do not have the HCP data at my computer here at the moment. Could you send me the peaks file and the brainmask? ([email protected])
That is strange. Master should work. Does it work if you downgrade dipy, e.g. `pip install --upgrade dipy==1.4.0` ?
The image resolution should not be a problem. Do the tract segmentations generated by TractSeg look good? What version of TractSeg are you using?
I am happy to hear to it worked finally.
This was an issue with cython which I added recently. It only works on the operating system which I used for building the binaries (ubuntu). I removed cython again. So...
Thanks for this tip. I will give it a try.
@HusBunia Could you try again to install TractSeg the following way and tell me if it works: ``` pip install future nibabel matplotlib sklearn scipy tqdm six psutil dipy joblib...
The logic for tracking is the following: All streamlines have to start and end inside of the masks in `endings_segmentations` and they have to be completely inside of mask of...
Hi, during the tracking we simply start and random points in the track mask and run until we reach the start/end mask. Therefore it is not enforced that start is...