Jeremiah Wala

icon indicating a website link https://www.dana-farber.org/

icon company DFCI icon location Boston, MA icon location Oncology Fellow | Dana Farber Cancer Institute / Mass General Brigham

Results 3 issues of Jeremiah Wala

bseq1_t --> fseq1_t

3 comment

Hi Heng, In trying to link bwa and fml in the same executable, I ran into an issue where ``bseq1_t`` was defined differently in each library. I ended up making...

4x speed improvement

Simple fix to pass `nbh` vector across `neighborhood_` calls rather than build new and transfer within each function. Saves a lot of unnecessary vector creation/destruction. Identical output, ~4x speed improvement...

thread safety in faidx_fetch_seq

3 comment

I am getting unexpected behavior in `faidx_fetch_seq` when I run with multiple threads, using the pthread library for multithreading. I am linking libhts.a along with C++ code, using the -pthread...