wackerk

patch output genome is identical to input target genome

3

Hello! I am attempting to patch a scaffold-assembled reference genome of a congener of my focal bird species (TANG, in the code below) with a chromosome-level reference genome of a...

"clean" function unmasks the genome?

1

Hello, We have screened and cleaned many de novo assemblies with fcs-gx. We used the cleaning command: ``` cat ${FASTA} | python3 ${FCSGS_SCRIPT} --image ${IMAGE} --env-file /work/kwacker/env.txt \ clean genome...