vmkalbskopf

Hi I am trying to run gencore on sorted RNA reads mapped with STAR. The input bam file is 708 MB. The reference genome is 22MB. Here is the command...

I can't connect from my Ubuntu 22.08 workstation to another Linux server. ``` ssh -V OpenSSH_8.9p1 Ubuntu-3, OpenSSL 3.0.2 15 Mar 2022` ``` Here's my settings.json ``` { "workbench.colorTheme": "Solarized...

I installed TPMCalculator using conda from the bioconda channel `mamba install tpmcalculator=0.0.4` However: ``` TPMCalculator -version Version: 0.0.3 ```

"elf_dynamic_array_reader.h:61 tag not found" when loading an iqtree file

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That is the error when I try to load an iqtree file in RStudio. If I try to load it in a base R session, I get this: ` ***...

`cat R47.1.fq | parallel --roundrobin -L4 -j20 --pipe kz` does not produce any output or error. Doing it without parallel takes longer than I'm willing to wait (it's 26GB) but...

`to-mr -o 1455.mr ../1455.srtd.mkdups.rdgrps.bam` runs without error. Here are the first 3 lines of the .mr file: `PRELSG_01_v1 119 134 M03562:43:000000000-BLRTF:1:1117:17291:24151 0 - AAGGATCAAAAAGCT PRELSG_01_v1 137 259 FRAG:M03562:43:000000000-BLRTF:1:2111:7502:341 0 -...