Victoria

It works now! Thanks. I'm going to check carefully the matter about DEL and INS and I'll get back to you.

Hi again, I think something is wrong with the generated .vcf but not entirely. This is part of the output.vcf for an insertion: ``` input.bim 10 10:80432024:I:6 0 80432024 CCTACAG...

Ok, I'll wait for the final update then. Thanks for your time.

In case someone need it: Since my knowledge of java is zero, using this version c81f95b, I fixed the the positions of the deletions after the .vcf file was generated...

Hi, I have the same problem @sineadsayo had but in my case I'm working with overleaf. When running your code on overleaf it works fine. But if I try to...

So... the issue was this https://github.com/overleaf/overleaf/issues/171 My compilation file wasn't in the root folder... Thanks for the code! it works very nicely