sequenceTubeMap

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Visualizing a graph from short sequences

2

Hi all, I want to print an image that sequenceTubeMap. I have used these codes for seuenceTubeMap. Please, help me with the image. my_seq is below; >Pper_ch7_3864816-3866050_INV TTCACCTGTTTTGAGTTTATTCCTGAGATGGAACGGCAAAGTTCCCCACTGCCTTGGAAACCATTGATTGGTCAACAAGTCAGCTTTCTTTGGTGTATGAGCGTGCCACTACTAGCAATAAAGATTATAGCAGACTTCTTTA >Pav_ch6_32611111-32611754_INV TTCACCCGTTTTGATTTGTCTTCTGTGATGGTAGGCAAAGTTCCCCATTGCCTTGGAAACCATTGACTGGTCAACAAGTCAACTTTCTTTAGTGTGCGAGCGTGCCACTGCTAGCAATGAAAAATCCTAGCAGACTTCTTTA...

pbreeder

I tried downloading an image for a small but wide uploaded vg file, zoomed all the way out, and I got an SVG where all the content is off the...

adamnovak

Addresses #418, not done yet.

shreyasun

@xchang1 has a tube map SVG where all paths visiting some SNP alleles visit them in reverse, but the tube map doesn't flip them around like it is meant to....

adamnovak

Make ITCR September 16 slide on how to install Tube Map and use with Lancet

1

adamnovak

Bundle tube map for easy installation into an executable or tarball

4

adamnovak

Hosting SequenceTubeMap for Public Access

1

Hello hello. I'm currently working on a pangenome project and using SequenceTubeMap to visualize specific regions. During a meeting with my advisor, we discussed the possibility of making the pangenome...

syresbr

port should be 3001 in the src/server.mjs

4

The line 56 should be: ``` const SERVER_PORT = process.env.SERVER_PORT || config.serverPort || 3001; ```

lixiang117423

This should fix #476 by changing the docs to point at the port we actually run the server from `npm run serve` on, and documenting how to move it on...

adamnovak

Synthetic Data Examples

1

Hello, I was wondering if there was any data available (VCF, BED) that corresponds to the synthetic examples? Thanks!

mcbbaker